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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015810549.1_cds_XP_016496258.1_10500
CDS Infomation

[gene=LOC107815224] [db_xref=GeneID:107815224] [protein=putative clathrin assembly protein At5g35200] [protein_id=XP_016496258.1] [location=complement(join(18620..18988,20519..20637,20723..20798,20888..21046,21306..21383,21482..21562,21679..21744,21834..21899,21988..22038,22156..22239,22656..22756,22848..22989,24647..24744,24852..24921,25009..25107))] [gbkey=CDS]
Sequence

ATGTCGGGAGGAGGTACGCAGAACAGTTTAAGGAAAACCCTTGGAGCACTCAAGGATACA
ACTACTGTCAGTTTAGCTAAAATTAATAGCGGCTATAAGGAATTGGATATTGCTATAGTT
AAGGCAACAAATCATGTTGAACAGCCAGCAAAAGAGAAGTACATAAGAGCCATTTTTTCT
GCCATTTCGGCTACCAGGCCTCGAGCTGATGTTGCATACTGCATTCACGCTCTTGCAAGA
AGATTGTCGAAGACGCATAATTGGGCGGTTGCGTTAAAAACATTGATTGTCATTCACCGT
GCTTTAAGAGAGGTGGACCCTACATTCCAGGAGGAACTTATTAACTATGGTCGCAGCAGA
AATCGCATGCTTAACATGGCTCATTTCAAAGATGACTCTAGTCCAAATGCATGGGATTAC
TCTGCTTGGGTGCGTTCGTATGCCTTGTTCCTGGAGGAGAGGCTGGAATGTTTTCGAGTG
CTGACATATGATGTGGAGACCGATCGTCCGAGAACTAAAGATTTAGACACGCCGGAGTTG
CTTGAACAGTTACCAGCCTTACAACAACTTCTGTATCGTATTATCGGCTGTCAGCCACAA
GGGGCGTCTGTTCACAACTTTGTGGTTCAGTTAGCACTTTCAATGGTTGCTTCAGAGAGC
ATTAAAATCTATAACGCTATCAGTGATGGTACAGTTAATTTAGTTGACAAGTTCTTTGAG
ATGCAACGGACAGATGCTCTTAGGTCTCTCGATATATACCGCAGGGCTGGTCAGCAGGCT
GAAGCGCTTTCAGAGTTTTACGAAATATGTAAAAGTATCGACGTGGGACGTGGCGAGAAA
TTTATTAAAATTGAGCAGCCCCCTGCATCATTTTTACAAGCAATGGAGGAGTATGTGAGA
GAAGCACCACGAGCTTCTACCGTGCGGAAAGATTCGGAACCCAAAGTTATTTTGGCTATT
GAGTACAAAAAGGACTCAGAGGTCAAAGATGCTGGCTCCCGTTCTCCCCCTCCACCTGAA
CCTGAAAAGGAACCTGAACCAAAGCCGGAGCCGGTTAAAACGGAAGCTCCACCGGCAGAA
CCTGCTGATCTTTTGTCTTTGGATGATCCTTCTCCAGCAGTTGCAGAACTAGATGAGAAA
AATTCTTTGGCTTTAGCTATCGTACCAGTTGGCTCTAGCAACCCACCGGCTTCAGCTGTT
TCAAATCTTACTAATGGAGCTACAGGCTGGGAATTGGCTCTTGTCGAAGCTCCCAGCTCG
AATGAGAGTGCCACTACGACGAGTAAACTGGCCGGAGGACTTGACAAACTTACGCTAGAT
AGTTTGTATGATGATGCAATGAGACAAACCAACCAAAATGTGAGCTATAATCCGTGGGAA
CCTGCACCAGTAGCTTCTCAAATGATGCCAAACGTTGGATACGACCCGTTCTACGTATCA
AACATGGTGGCAGCCCCAACTAATGTGCAAATGGCAGCCATGGCGAACCAGCAACAGGCT
TTCATGTTACAGCAACAACAACAACATATGATGATGATGACTCCCCAACCACAACCGACT
GCGAATCCTTTCGCCAACCCTTATGGAGCAAATGCCAATCCATACGGCCCCGGTATGCCT
GTACAAGCATATAATCCCTATCATACTGGCCTCATTTGA

Peptide Sequence

PEP ID

XP_016496258.1
PEP Infomation

PREDICTED: putative clathrin assembly protein At5g35200 [Nicotiana tabacum]
Sequence

MSGGGTQNSLRKTLGALKDTTTVSLAKINSGYKELDIAIVKATNHVEQPAKEKYIRAIFS
AISATRPRADVAYCIHALARRLSKTHNWAVALKTLIVIHRALREVDPTFQEELINYGRSR
NRMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLTYDVETDRPRTKDLDTPEL
LEQLPALQQLLYRIIGCQPQGASVHNFVVQLALSMVASESIKIYNAISDGTVNLVDKFFE
MQRTDALRSLDIYRRAGQQAEALSEFYEICKSIDVGRGEKFIKIEQPPASFLQAMEEYVR
EAPRASTVRKDSEPKVILAIEYKKDSEVKDAGSRSPPPPEPEKEPEPKPEPVKTEAPPAE
PADLLSLDDPSPAVAELDEKNSLALAIVPVGSSNPPASAVSNLTNGATGWELALVEAPSS
NESATTTSKLAGGLDKLTLDSLYDDAMRQTNQNVSYNPWEPAPVASQMMPNVGYDPFYVS
NMVAAPTNVQMAAMANQQQAFMLQQQQQHMMMMTPQPQPTANPFANPYGANANPYGPGMP
VQAYNPYHTGLI

Transcript Sequence

Gene sequence data has not been registered.